openmmtools.integrators.PeriodicNonequilibriumIntegrator
========================================================

.. currentmodule:: openmmtools.integrators

.. autoclass:: PeriodicNonequilibriumIntegrator

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~PeriodicNonequilibriumIntegrator.__init__
      ~PeriodicNonequilibriumIntegrator.addComputeGlobal
      ~PeriodicNonequilibriumIntegrator.addComputePerDof
      ~PeriodicNonequilibriumIntegrator.addComputeSum
      ~PeriodicNonequilibriumIntegrator.addComputeTemperatureDependentConstants
      ~PeriodicNonequilibriumIntegrator.addConstrainPositions
      ~PeriodicNonequilibriumIntegrator.addConstrainVelocities
      ~PeriodicNonequilibriumIntegrator.addGlobalVariable
      ~PeriodicNonequilibriumIntegrator.addPerDofVariable
      ~PeriodicNonequilibriumIntegrator.addTabulatedFunction
      ~PeriodicNonequilibriumIntegrator.addUpdateContextState
      ~PeriodicNonequilibriumIntegrator.beginIfBlock
      ~PeriodicNonequilibriumIntegrator.beginWhileBlock
      ~PeriodicNonequilibriumIntegrator.deserialize_xml
      ~PeriodicNonequilibriumIntegrator.endBlock
      ~PeriodicNonequilibriumIntegrator.getComputationStep
      ~PeriodicNonequilibriumIntegrator.getConstraintTolerance
      ~PeriodicNonequilibriumIntegrator.getGlobalVariable
      ~PeriodicNonequilibriumIntegrator.getGlobalVariableByName
      ~PeriodicNonequilibriumIntegrator.getGlobalVariableName
      ~PeriodicNonequilibriumIntegrator.getIntegrationForceGroups
      ~PeriodicNonequilibriumIntegrator.getKineticEnergyExpression
      ~PeriodicNonequilibriumIntegrator.getNumComputations
      ~PeriodicNonequilibriumIntegrator.getNumGlobalVariables
      ~PeriodicNonequilibriumIntegrator.getNumPerDofVariables
      ~PeriodicNonequilibriumIntegrator.getNumTabulatedFunctions
      ~PeriodicNonequilibriumIntegrator.getPerDofVariable
      ~PeriodicNonequilibriumIntegrator.getPerDofVariableByName
      ~PeriodicNonequilibriumIntegrator.getPerDofVariableName
      ~PeriodicNonequilibriumIntegrator.getRandomNumberSeed
      ~PeriodicNonequilibriumIntegrator.getStepSize
      ~PeriodicNonequilibriumIntegrator.getTabulatedFunction
      ~PeriodicNonequilibriumIntegrator.getTabulatedFunctionName
      ~PeriodicNonequilibriumIntegrator.getTemperature
      ~PeriodicNonequilibriumIntegrator.get_acceptance_rate
      ~PeriodicNonequilibriumIntegrator.get_heat
      ~PeriodicNonequilibriumIntegrator.get_protocol_work
      ~PeriodicNonequilibriumIntegrator.get_shadow_work
      ~PeriodicNonequilibriumIntegrator.get_total_work
      ~PeriodicNonequilibriumIntegrator.is_restorable
      ~PeriodicNonequilibriumIntegrator.is_thermostated
      ~PeriodicNonequilibriumIntegrator.pretty_format
      ~PeriodicNonequilibriumIntegrator.pretty_print
      ~PeriodicNonequilibriumIntegrator.reset
      ~PeriodicNonequilibriumIntegrator.reset_ghmc_statistics
      ~PeriodicNonequilibriumIntegrator.reset_heat
      ~PeriodicNonequilibriumIntegrator.reset_protocol_work
      ~PeriodicNonequilibriumIntegrator.reset_shadow_work
      ~PeriodicNonequilibriumIntegrator.restore_interface
      ~PeriodicNonequilibriumIntegrator.setConstraintTolerance
      ~PeriodicNonequilibriumIntegrator.setGlobalVariable
      ~PeriodicNonequilibriumIntegrator.setGlobalVariableByName
      ~PeriodicNonequilibriumIntegrator.setIntegrationForceGroups
      ~PeriodicNonequilibriumIntegrator.setKineticEnergyExpression
      ~PeriodicNonequilibriumIntegrator.setPerDofVariable
      ~PeriodicNonequilibriumIntegrator.setPerDofVariableByName
      ~PeriodicNonequilibriumIntegrator.setRandomNumberSeed
      ~PeriodicNonequilibriumIntegrator.setStepSize
      ~PeriodicNonequilibriumIntegrator.setTemperature
      ~PeriodicNonequilibriumIntegrator.step
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~PeriodicNonequilibriumIntegrator.BlockEnd
      ~PeriodicNonequilibriumIntegrator.ComputeGlobal
      ~PeriodicNonequilibriumIntegrator.ComputePerDof
      ~PeriodicNonequilibriumIntegrator.ComputeSum
      ~PeriodicNonequilibriumIntegrator.ConstrainPositions
      ~PeriodicNonequilibriumIntegrator.ConstrainVelocities
      ~PeriodicNonequilibriumIntegrator.IfBlockStart
      ~PeriodicNonequilibriumIntegrator.UpdateContextState
      ~PeriodicNonequilibriumIntegrator.WhileBlockStart
      ~PeriodicNonequilibriumIntegrator.acceptance_rate
      ~PeriodicNonequilibriumIntegrator.global_variable_names
      ~PeriodicNonequilibriumIntegrator.heat
      ~PeriodicNonequilibriumIntegrator.is_metropolized
      ~PeriodicNonequilibriumIntegrator.kT
      ~PeriodicNonequilibriumIntegrator.protocol_work
      ~PeriodicNonequilibriumIntegrator.shadow_work
      ~PeriodicNonequilibriumIntegrator.thisown
      ~PeriodicNonequilibriumIntegrator.total_work