openmmtools.integrators.NoseHooverChainVelocityVerletIntegrator =============================================================== .. currentmodule:: openmmtools.integrators .. autoclass:: NoseHooverChainVelocityVerletIntegrator .. automethod:: __init__ .. rubric:: Methods .. autosummary:: ~NoseHooverChainVelocityVerletIntegrator.__init__ ~NoseHooverChainVelocityVerletIntegrator.addComputeGlobal ~NoseHooverChainVelocityVerletIntegrator.addComputePerDof ~NoseHooverChainVelocityVerletIntegrator.addComputeSum ~NoseHooverChainVelocityVerletIntegrator.addComputeTemperatureDependentConstants ~NoseHooverChainVelocityVerletIntegrator.addConstrainPositions ~NoseHooverChainVelocityVerletIntegrator.addConstrainVelocities ~NoseHooverChainVelocityVerletIntegrator.addGlobalVariable ~NoseHooverChainVelocityVerletIntegrator.addPerDofVariable ~NoseHooverChainVelocityVerletIntegrator.addTabulatedFunction ~NoseHooverChainVelocityVerletIntegrator.addUpdateContextState ~NoseHooverChainVelocityVerletIntegrator.beginIfBlock ~NoseHooverChainVelocityVerletIntegrator.beginWhileBlock ~NoseHooverChainVelocityVerletIntegrator.computeEnergies ~NoseHooverChainVelocityVerletIntegrator.deserialize_xml ~NoseHooverChainVelocityVerletIntegrator.endBlock ~NoseHooverChainVelocityVerletIntegrator.getComputationStep ~NoseHooverChainVelocityVerletIntegrator.getConstraintTolerance ~NoseHooverChainVelocityVerletIntegrator.getGlobalVariable ~NoseHooverChainVelocityVerletIntegrator.getGlobalVariableByName ~NoseHooverChainVelocityVerletIntegrator.getGlobalVariableName ~NoseHooverChainVelocityVerletIntegrator.getIntegrationForceGroups ~NoseHooverChainVelocityVerletIntegrator.getKineticEnergyExpression ~NoseHooverChainVelocityVerletIntegrator.getNumComputations ~NoseHooverChainVelocityVerletIntegrator.getNumGlobalVariables ~NoseHooverChainVelocityVerletIntegrator.getNumPerDofVariables ~NoseHooverChainVelocityVerletIntegrator.getNumTabulatedFunctions ~NoseHooverChainVelocityVerletIntegrator.getPerDofVariable ~NoseHooverChainVelocityVerletIntegrator.getPerDofVariableByName ~NoseHooverChainVelocityVerletIntegrator.getPerDofVariableName ~NoseHooverChainVelocityVerletIntegrator.getRandomNumberSeed ~NoseHooverChainVelocityVerletIntegrator.getStepSize ~NoseHooverChainVelocityVerletIntegrator.getTabulatedFunction ~NoseHooverChainVelocityVerletIntegrator.getTabulatedFunctionName ~NoseHooverChainVelocityVerletIntegrator.getTemperature ~NoseHooverChainVelocityVerletIntegrator.is_restorable ~NoseHooverChainVelocityVerletIntegrator.is_thermostated ~NoseHooverChainVelocityVerletIntegrator.pretty_format ~NoseHooverChainVelocityVerletIntegrator.pretty_print ~NoseHooverChainVelocityVerletIntegrator.propagateNHC ~NoseHooverChainVelocityVerletIntegrator.restore_interface ~NoseHooverChainVelocityVerletIntegrator.setConstraintTolerance ~NoseHooverChainVelocityVerletIntegrator.setGlobalVariable ~NoseHooverChainVelocityVerletIntegrator.setGlobalVariableByName ~NoseHooverChainVelocityVerletIntegrator.setIntegrationForceGroups ~NoseHooverChainVelocityVerletIntegrator.setKineticEnergyExpression ~NoseHooverChainVelocityVerletIntegrator.setPerDofVariable ~NoseHooverChainVelocityVerletIntegrator.setPerDofVariableByName ~NoseHooverChainVelocityVerletIntegrator.setRandomNumberSeed ~NoseHooverChainVelocityVerletIntegrator.setStepSize ~NoseHooverChainVelocityVerletIntegrator.setTemperature ~NoseHooverChainVelocityVerletIntegrator.step .. rubric:: Attributes .. autosummary:: ~NoseHooverChainVelocityVerletIntegrator.BlockEnd ~NoseHooverChainVelocityVerletIntegrator.ComputeGlobal ~NoseHooverChainVelocityVerletIntegrator.ComputePerDof ~NoseHooverChainVelocityVerletIntegrator.ComputeSum ~NoseHooverChainVelocityVerletIntegrator.ConstrainPositions ~NoseHooverChainVelocityVerletIntegrator.ConstrainVelocities ~NoseHooverChainVelocityVerletIntegrator.IfBlockStart ~NoseHooverChainVelocityVerletIntegrator.UpdateContextState ~NoseHooverChainVelocityVerletIntegrator.WhileBlockStart ~NoseHooverChainVelocityVerletIntegrator.YSWeights ~NoseHooverChainVelocityVerletIntegrator.global_variable_names ~NoseHooverChainVelocityVerletIntegrator.kT ~NoseHooverChainVelocityVerletIntegrator.thisown