openmmtools.multistate.ReplicaExchangeAnalyzer
==============================================

.. currentmodule:: openmmtools.multistate

.. autoclass:: ReplicaExchangeAnalyzer

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~ReplicaExchangeAnalyzer.__init__
      ~ReplicaExchangeAnalyzer.clear
      ~ReplicaExchangeAnalyzer.generate_mixing_statistics
      ~ReplicaExchangeAnalyzer.get_effective_energy_timeseries
      ~ReplicaExchangeAnalyzer.get_enthalpy
      ~ReplicaExchangeAnalyzer.get_entropy
      ~ReplicaExchangeAnalyzer.get_free_energy
      ~ReplicaExchangeAnalyzer.read_energies
      ~ReplicaExchangeAnalyzer.read_logZ
      ~ReplicaExchangeAnalyzer.read_log_weights
      ~ReplicaExchangeAnalyzer.reformat_energies_for_mbar
      ~ReplicaExchangeAnalyzer.show_mixing_statistics
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~ReplicaExchangeAnalyzer.has_log_weights
      ~ReplicaExchangeAnalyzer.kT
      ~ReplicaExchangeAnalyzer.max_n_iterations
      ~ReplicaExchangeAnalyzer.mbar
      ~ReplicaExchangeAnalyzer.n_equilibration_iterations
      ~ReplicaExchangeAnalyzer.n_iterations
      ~ReplicaExchangeAnalyzer.n_replicas
      ~ReplicaExchangeAnalyzer.n_states
      ~ReplicaExchangeAnalyzer.name
      ~ReplicaExchangeAnalyzer.observables
      ~ReplicaExchangeAnalyzer.reference_states
      ~ReplicaExchangeAnalyzer.reporter
      ~ReplicaExchangeAnalyzer.restraint_distance_cutoff
      ~ReplicaExchangeAnalyzer.restraint_energy_cutoff
      ~ReplicaExchangeAnalyzer.statistical_inefficiency
      ~ReplicaExchangeAnalyzer.unbias_restraint
      ~ReplicaExchangeAnalyzer.use_full_trajectory
      ~ReplicaExchangeAnalyzer.use_online_data